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  "Package": "DiPALM",
  "Type": "Package",
  "Title": "Differential Pattern Analysis via Linear Modeling",
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  "Date": "2026-05-21",
  "Authors@R": "c(person(given = c(\"Ryan\", \"C.\"),\nfamily = \"Sartor\",\nrole = c(\"aut\", \"cre\"),\nemail = \"sartorry@gmail.com\"),\nperson(given = \"Kathleen\",\nfamily = \"Greenham\",\nrole = \"aut\",\nemail = \"greenham@umn.edu\"),\nperson(given = \"William\",\nfamily = \"Gustafson\",\nrole = \"aut\",\nemail = \"williamlgustafson@gmail.com\"))",
  "Description": "Individual gene expression patterns are encoded into a\nseries of eigenvector patterns ('WGCNA' package). Using the\nframework of linear model-based differential expression\ncomparisons ('limma' package), time-course expression patterns\nfor genes in different conditions are compared and analyzed for\nsignificant pattern changes. For reference, see: Greenham K,\nSartor RC, Zorich S, Lou P, Mockler TC and McClung CR. eLife.\n2020 Sep 30;9(4). <doi:10.7554/eLife.58993>.",
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    "User": "root"
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  "Author": "Ryan C. Sartor [aut, cre], Kathleen Greenham [aut], William\nGustafson [aut]",
  "Maintainer": "Ryan C. Sartor <sartorry@gmail.com>",
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      "page": "DiPALM-package",
      "title": "DiPALM - Differential Pattern Analysis via Linear Modeling",
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        "time-course",
        "differential gene expression",
        "differential gene patterns"
      ],
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        "DiPALM-package",
        "DiPALM"
      ]
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      "title": "Determine p-values based on permutation test results",
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      "topics": [
        "BuildLimmaLM"
      ]
    },
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        "pattern of expression",
        "differential pattern of expression"
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        "differential pattern of expression"
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