Package: DiPALM
Type: Package
Title: Differential Pattern Analysis via Linear Modeling
Version: 1.3
Date: 2026-05-21
Authors@R: c(person(given = c("Ryan", "C."),
                      family = "Sartor",
                      role = c("aut", "cre"),
                      email = "sartorry@gmail.com"),
               person(given = "Kathleen",
                      family = "Greenham",
                      role = "aut",
                      email = "greenham@umn.edu"),
               person(given = "William",
                      family = "Gustafson",
                      role = "aut",
                      email = "williamlgustafson@gmail.com"))
Description: Individual gene expression patterns are encoded into a
        series of eigenvector patterns ('WGCNA' package). Using the
        framework of linear model-based differential expression
        comparisons ('limma' package), time-course expression patterns
        for genes in different conditions are compared and analyzed for
        significant pattern changes. For reference, see: Greenham K,
        Sartor RC, Zorich S, Lou P, Mockler TC and McClung CR. eLife.
        2020 Sep 30;9(4). <doi:10.7554/eLife.58993>.
License: GPL (>= 2)
Imports: limma, WGCNA, ggplot2, pwalign, Biostrings, hashr
Suggests: edgeR
NeedsCompilation: no
Packaged: 2026-09-17 09:18:58 UTC; root
Depends: R (>= 4.1.0)
Author: Ryan C. Sartor [aut, cre], Kathleen Greenham [aut], William
        Gustafson [aut]
Maintainer: Ryan C. Sartor <sartorry@gmail.com>
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev zlib1g-dev
Repository: https://humanoidtyphoon.r-universe.dev
Date/Publication: 2026-05-29 12:29:37 UTC
RemoteUrl: https://github.com/cran/DiPALM
RemoteRef: HEAD
RemoteSha: c60e171aa01b79884dbd0f0d1c745ba84e983e5c